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maximum likelihood phylogeny

Subcategory: phylogenetic
Standard reference: Minh et al., 2020
Papers: 2 | Mentions: 3

Local Knowledge Graph (38 entities)

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Knowledge graph centered on maximum likelihood phylogeny with 38 nodes and 119 connections. Top connected: Lepidoptera, Bacteria, Colias, chickens, All Chickens.

Description

Construction of phylogenetic trees using concatenated ribosomal protein genes to determine evolutionary relationships. Uses IQ-TREE with maximum likelihood approach and bootstrap support.

Typical Equipment

  • IQ-TREE software

Output Measurements

  • phylogenetic trees
  • bootstrap support values

Papers Using This Protocol (2)

article

Metagenome-assembled genomes for oligotrophic nitrifiers From a mountainous gravelbed floodplain

2025Environmental Microbiologyusing
article

A genetic polymorphism evolving in parallel in two cell compartments and in two clades

2013BMC Evolutionary Biologyusing

Species Studied With This Protocol

Bacteria

2 papers

Bos taurus

Bovidae1 paper

chickens

1 paper

Gallus gallus

Phasianidae1 paper

cottonwood

1 paper

Lepidoptera

1 paper

Colias butterflies

1 paper

Homo sapiens

Hominidae1 paper

rooted macrophytes

1 paper

All Chickens

1 paper