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Nested genetic variation simulation (Myrtaceae)

Subcategory: population genetics modeling
Papers: 1 | Mentions: 1

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Knowledge graph centered on Nested genetic variation simulation (Myrtaceae) with 23 nodes and 83 connections. Top connected: Spruce, Populus, Boechera stricta, Boechera, ecosystem function.

Description

Simulates trait data with hierarchical genetic structure where genotypes are nested within species, allowing comparison of nested vs non-nested statistical approaches. Uses allele matrices to generate additive genetic effects with environmental noise.

Typical Equipment

  • R 3.0.1 statistical programming language
  • MATLAB v8.4 programming language

Output Measurements

  • simulated trait values
  • genotype classifications
  • species classifications

Papers Using This Protocol (1)

article

Accounting for the nested nature of genetic variation across levels of organization improves our understanding of biodiversity and community ecology

2016Oikosintroducing

Species Studied With This Protocol

Spruce

1 paper

Populus angustifolia

Salicaceae1 paper

cottonwood

1 paper

Populus

Salicaceae1 paper

weed species

1 paper

Boechera stricta

Brassicaceae1 paper

Boechera

Brassicaceae1 paper

Eucalyptus

Myrtaceae1 paper

Poecilia reticulata

Poeciliidae1 paper

Solidago

Asteraceae1 paper