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Viral sequence detection and vOTU clustering
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Knowledge graph centered on Viral sequence detection and vOTU clustering with 36 nodes and 114 connections. Top connected: Unknown, Potentilla, Bacteria, A. tridentata, Lupinus.
Description
Computational pipeline using VirSorter2 and CheckV for viral sequence identification, followed by clustering into viral operational taxonomic units and taxonomic/host prediction.
Typical Equipment
- VirSorter2
- CheckV
- geNomad
- iPHoP
- Mummer
Output Measurements
- viral contigs
- vOTUs
- taxonomic assignments
- host predictions