Filtered by neighborhood:Microbial Communities and Forest Biogeochemistry in Mountain WatershedsClear filter
Protocols
3 protocols
computationalstandardized
metaSPAdes assembly pipeline
Standard metagenomics pipeline involving assembly with MEGAHIT, binning with multiple tools, dereplication, and taxonomic classification using GTDB-tk.
computational
Viral sequence detection and vOTU clustering
Computational pipeline using VirSorter2 and CheckV for viral sequence identification, followed by clustering into viral operational taxonomic units and taxonomic/host prediction.
computational
TPM normalization
Normalization of transcriptomic data using Transcripts Per Million (TPM) method.