Protocols
15 protocols
Multi-factor abiotic site characterization
Comprehensive measurement of soil nutrients, moisture, pH, topographic aspect, and interpolated climate variables to characterize abiotic conditions at vegetation sampling sites.
Satellite-based snow disappearance tracking
Time-series analysis of Landsat and Sentinel satellite imagery to determine seasonal snow disappearance dates using Normalized Difference Snow Index with interpolation algorithms to fill temporal gaps...
Multi-model PlanetScope snow cover classification
Machine learning approach for snow cover mapping using PlanetScope imagery with multiple model configurations incorporating spectral, topographic, and vegetation variables. Performance evaluation acro...
Plant fitness monitoring in field experiment (Plantae)
Repeated measurements of plant morphological traits (tillers, leaves, height) and survival tracking to assess fitness responses to experimental treatments.
Ant worker size manipulation experiment
Experimental removal of workers of specific sizes from ant colonies to test effects on subsequent reproductive output. Workers were collected, measured, and selectively removed or returned to test siz...
Random Forest climate downscaling
Machine learning approach using Random Forest algorithms to downscale coarse resolution climate data to higher spatial resolution using topographic predictors. Models are trained on relationships betw...
Rolatape transect gopher disturbance survey
Systematic survey of pocket gopher soil disturbances (eskers, mounds) along standardized transects using rolatape measuring wheels with perpendicular PVC pipe to standardize observation width. Each di...
LiDAR point cloud processing
Processing of discrete-return LiDAR data using lidR package to generate canopy height models. Includes normalization, subsetting, and reprojection.
Linear regression gap filling
Statistical method used to fill missing data areas using relationships between 2018 and 2019 snow depths or snow depth to elevation relationships.
NDVI calculation from NAIP imagery
Calculation of Normalized Differential Vegetation Index from 4-band aerial imagery using (NIR-Red)/(NIR+Red) formula.
UAV RGB orthomosaic generation
UAV flights using DJI Mavic 2 Pro collecting RGB images with 3cm ground sample distance. Images processed via Structure from Motion in Agisoft Metashape to create georeferenced orthomosaics.
airborne LiDAR scanning
High-density airborne LiDAR scans collected in August-September 2015 and 2019 to generate normalized point clouds.
bilinear resampling
Resampling of 0.6m resolution imagery to 1m grid resolution using bilinear interpolation.
snow-free growing degree day calculation
Temperatures above 5°C summed only for days estimated to be free of snow to measure energy available for biological processes.
subcanopy solar radiation model
Applies subcanopy solar radiation model from Bode et al. 2014 to account for vegetation shading greater than 1m in height.