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Protocols

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15 protocols

measurement

Multi-factor abiotic site characterization

Comprehensive measurement of soil nutrients, moisture, pH, topographic aspect, and interpolated climate variables to characterize abiotic conditions at vegetation sampling sites.

environmental monitoring5 paperssoil sampling tools, pH meter...
analytical

Satellite-based snow disappearance tracking

Time-series analysis of Landsat and Sentinel satellite imagery to determine seasonal snow disappearance dates using Normalized Difference Snow Index with interpolation algorithms to fill temporal gaps...

remote sensing5 papersLandsat 8 satellite imagery, Sentinel 2 satellite imagery...
computationalstandardized

Multi-model PlanetScope snow cover classification

Machine learning approach for snow cover mapping using PlanetScope imagery with multiple model configurations incorporating spectral, topographic, and vegetation variables. Performance evaluation acro...

remote sensing2 papersPlanetScope satellite constellation, Machine learning software...
measurement

Plant fitness monitoring in field experiment (Plantae)

Repeated measurements of plant morphological traits (tillers, leaves, height) and survival tracking to assess fitness responses to experimental treatments.

demographic monitoring2 papersmeasuring rulers accurate to 0.1 cm, field notebooks
experimental

Ant worker size manipulation experiment

Experimental removal of workers of specific sizes from ant colonies to test effects on subsequent reproductive output. Workers were collected, measured, and selectively removed or returned to test siz...

demographic manipulation1 paperacrylic paint pen, 10x hand lens...
computational

Random Forest climate downscaling

Machine learning approach using Random Forest algorithms to downscale coarse resolution climate data to higher spatial resolution using topographic predictors. Models are trained on relationships betw...

statistical downscaling1 paperPRISM climate dataset, Daymet dataset...
sampling

Rolatape transect gopher disturbance survey

Systematic survey of pocket gopher soil disturbances (eskers, mounds) along standardized transects using rolatape measuring wheels with perpendicular PVC pipe to standardize observation width. Each di...

mammal sign survey1 paperPrecimeter 305 rolatape, Rolatape Measuring Wheels 2014...
computational

LiDAR point cloud processing

Processing of discrete-return LiDAR data using lidR package to generate canopy height models. Includes normalization, subsetting, and reprojection.

0 papers
analytical

Linear regression gap filling

Statistical method used to fill missing data areas using relationships between 2018 and 2019 snow depths or snow depth to elevation relationships.

0 papers
analytical

NDVI calculation from NAIP imagery

Calculation of Normalized Differential Vegetation Index from 4-band aerial imagery using (NIR-Red)/(NIR+Red) formula.

0 papers
sampling

UAV RGB orthomosaic generation

UAV flights using DJI Mavic 2 Pro collecting RGB images with 3cm ground sample distance. Images processed via Structure from Motion in Agisoft Metashape to create georeferenced orthomosaics.

0 papers
sampling

airborne LiDAR scanning

High-density airborne LiDAR scans collected in August-September 2015 and 2019 to generate normalized point clouds.

0 papers
analytical

bilinear resampling

Resampling of 0.6m resolution imagery to 1m grid resolution using bilinear interpolation.

0 papers
analytical

snow-free growing degree day calculation

Temperatures above 5°C summed only for days estimated to be free of snow to measure energy available for biological processes.

0 papers
computational

subcanopy solar radiation model

Applies subcanopy solar radiation model from Bode et al. 2014 to account for vegetation shading greater than 1m in height.

0 papers