Stream Invertebrate and Trout Population Ecology Datasets
Integrates population dynamics datasets, genomic protocols, and demographic sampling methods to study brook trout, mayflies, and parasitic nematodes in Rocky Mountain streams.
Knowledge Graph (144 nodes, 463 connections)
Concept (31) →
population dynamics
Changes in population size and structure over time driven by vital rates and environmental factors
demography
prey selection
plant-pathogen interactions
Selective pressure relationships between host plants and their parasites that can shift based on environmental changes
demographic factors
Age and sex characteristics affecting susceptibility to mortality
life history
phenomenon time
infection prevalence
infection prevalence
Proportion of individuals in a population showing signs of pathogen infection
size at maturity
Body size when organisms transition from growth to reproduction, with important consequences for lifetime reproductive success
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social transmission
Transmission of parasites among individuals within social mammalian groups
abundance
immunity
emergence weight
parasitic infection
North Atlantic Oscillation
Climatic index reflecting atmospheric pressure differences between Iceland and Azores
bottom-up forcing
metabarcoding
The identification of species from environmental DNA samples using target capture sequencing and database matching
drift phase
avian malaria
transmission dynamics
microvirus diversity
The variety and distribution of small circular single-stranded DNA viruses that infect bacteria
vertical transmission
Transmission of endosymbionts from mother to clonal offspring through the maternal lineage.
complement activation
phagocytosis
ant tending
flower visitation
seedbank
Seeds present in the soil that represent the potential for future plant community recruitment and composition
transition rates
stage
translocations
Protocol (8) →
microsatellite analysis (Animalia)
Pooled whole genome sequencing approach using DNA from multiple individuals per population to identify SNPs associated with environmental variables an...
demographic trap records (Animalia)
Trapping animals to record age, sex, locality, reproductive status, location changes, fate, and genetic information. Data collected across 37 years at...
Maximum likelihood phylogenetic analysis
Maximum likelihood phylogenetic analysis of full genome sequences using MUSCLE alignment and Tamura-Nei evolutionary model to determine relationships ...
Model selection for transmission pathways
Model selection analyses to evaluate possible transmission pathways including indirect vector transmission and direct predation transmission.
Viral sequence detection and vOTU clustering
Computational pipeline using VirSorter2 and CheckV for viral sequence identification, followed by clustering into viral operational taxonomic units an...
phagocytosis assay (Fungi)
Measurement of neutrophilic phagocytosis of fungal conidia using recombinant components.
fluorescence microscopy (Fungi)
Microscopic analysis of MASP binding to fungal pathogens using fluorescence techniques.
Global Biotic Interactions data integration
Integration process combining datasets from natural history collections, community science observations, and literature to compile bee interaction dat...
Dataset (38) →
Social Behavior and Population Dynamics of Marmots
This table contains 37 years of demographic data for 12 sites. The trap record for each animal for each year the animal was present includes age, sex,...
Social Behavior and Population Dynamics of Marmots
This table contains 37 years of demographic data for 12 sites. The trap record for each animal for each year the animal was present includes age, sex,...
Social Behavior and Population Dynamics of Marmots
This table contains 37 years of demographic data for 12 sites. The trap record for each animal for each year the animal was present includes age, sex,...
Social Behavior and Population Dynamics of Marmots
This table contains 37 years of demographic data for 12 sites. The trap record for each animal for each year the animal was present includes age, sex,...
Social Behavior and Population Dynamics of Marmots
This table contains 37 years of demographic data for 12 sites. The trap record for each animal for each year the animal was present includes age, sex,...
Social Behavior and Population Dynamics of Yellow-bellied Marmots
This table contains 36 years of trapping data. Up to 12 sites were studied annually within the vicinity of Rocky Mountain Biological Laboratory, Color...
Social Behavior and Population Dynamics of Marmots
This table contains 37 years of demographic data for 12 sites. The trap record for each animal for each year the animal was present includes age, sex,...
Supplementary Material for: MASP-1 and MASP-3 Bind Directly to <b><i>Aspergillus fumigatus</i></b> and Promote Complement Activation and Phagocytosis
Activation of the complement system is mediated by the interaction between pathogens and pattern recognition molecules (PRMs); mannose-binding lectin ...
Supplementary Material for: MASP-1 and MASP-3 Bind Directly to <b><i>Aspergillus fumigatus</i></b> and Promote Complement Activation and Phagocytosis
Activation of the complement system is mediated by the interaction between pathogens and pattern recognition molecules (PRMs); mannose-binding lectin ...
Additional file 2 of Virus diversity and activity is driven by snowmelt and host dynamics in a high-altitude watershed soil ecosystem
Additional file 2: Supplementary Table 1. Description of the 46 IMG metagenomes and 43 metatranscriptomes (related to Fig. 1A). Supplementary Table 2....
Show 28 more datasets
Social Behavior and Population Dynamics of Marmots
This table contains 37 years of demographic data for 12 sites. The trap record for each animal for each year the animal was present includes age, sex,...
Social Behavior and Population Dynamics of Yellow-bellied Marmots
This table contains 36 years of trapping data. Up to 12 sites were studied annually within the vicinity of Rocky Mountain Biological Laboratory, Color...
Social Behavior and Population Dynamics of Yellow-bellied Marmots
This table contains 36 years of trapping data. Up to 12 sites were studied annually within the vicinity of Rocky Mountain Biological Laboratory, Color...
Social Behavior and Population Dynamics of Yellow-bellied Marmots
This table contains 36 years of trapping data. Up to 12 sites were studied annually within the vicinity of Rocky Mountain Biological Laboratory, Color...
Social Behavior and Population Dynamics of Marmots
This table contains 36 years of demographic data for 12 sites. The trap record for each animal for each year the animal was present includes age, sex,...
Social Behavior and Population Dynamics of Yellow-bellied Marmots
This table contains 36 years of trapping data. Up to 12 sites were studied annually within the vicinity of Rocky Mountain Biological Laboratory, Color...
Social Behavior and Population Dynamics of Marmots
This table contains 36 years of demographic data for 12 sites. The trap record for each animal for each year the animal was present includes age, sex,...
Social Behavior and Population Dynamics of Marmots
This table contains 36 years of demographic data for 12 sites. The trap record for each animal for each year the animal was present includes age, sex,...
Social Behavior and Population Dynamics of Marmots
This table contains 37 years of demographic data for 12 sites. The trap record for each animal for each year the animal was present includes age, sex,...
Social Behavior and Population Dynamics of Marmots
This table contains 37 years of demographic data for 12 sites. The trap record for each animal for each year the animal was present includes age, sex,...
Social Behavior and Population Dynamics of Marmots
This table contains 37 years of demographic data for 12 sites. The trap record for each animal for each year the animal was present includes age, sex,...
Social Behavior and Population Dynamics of Marmots
This table contains 37 years of demographic data for 12 sites. The trap record for each animal for each year the animal was present includes age, sex,...
Social Behavior and Population Dynamics of Marmots
This table contains 37 years of demographic data for 12 sites. The trap record for each animal for each year the animal was present includes age, sex,...
Life History and Demography of Astragalus microcymbus
Astragalus microcymbus, the skiff milkvetch, is a perennial forb endemic to Gunnison and Saguache counties in Colorado, United States. In 1995 Denver ...
Global Bee Interaction Data
Last modified: January 09, 2025 IntroductionThis dataset comprises all bee interactions indexed by Global Biotic Interactions (GloBI; Poelen et al. 20...
Data from: Transmission pathways and spillover of an erythrocytic bacterial pathogen from domestic cats to wild felids
Many pathogens infect multiple hosts, and spillover from domestic to wild species poses a significant risk for spread of diseases that threaten wildli...
Phylogenetics.zip
Sequence alignment (.fas) and information associated with phylogenetic analysis and ancestral state reconstruction in Kellner et al. 2018.
Transmission_models
All code (.R) and raw data necessary to run model selection analyses of 'Ca. Mycoplasma haemominutum' transmission among felids as described in Kellne...
Global Bee Interaction Data
Last modified: July 3, 2024 IntroductionThis dataset comprises all bee interactions indexed by Global Biotic Interactions (GloBI; Poelen et al. 2014)....
Replication data for Fig 4.1, Gunnison uterine litter size vs litter size at first juvenile emergence, 19 Sept 2025.
FILE DESCRIPTION File name = Fig 4.1, Gunnison uterine litter size vs litter size at first juvenile emergence, 19 Sept 2025. These data used for Fig 4...
Phylogenetics.zip
Sequence alignment (.fas) and information associated with phylogenetic analysis and ancestral state reconstruction in Kellner et al. 2018.
Population matrix models for Frasera speciosa from 1974 to 2008
This dataset contains the matrix population models for a population of Frasera speciosa in the Elk Mountains of southwestern Colorado, for the years 1...
Replication data for: Fig 6.1, Dates of capture and ages of victims for single American Badger, 03 Nov 2025
FILE DESCRIPTION Keywords: American badger, dates of capture, age of victims, Gunnison's prairie dogs Filename = Fig 6.1, Dates of capture and ages of...
Sample collection information and microsatellite data for Gunnison sage-grouse pre and post translocation
Maintenance of genetic diversity is important for conserving species, especially those with fragmented habitats and/or ranges. In the absence of natur...
Transmission_models
All code (.R) and raw data necessary to run model selection analyses of 'Ca. Mycoplasma haemominutum' transmission among felids as described in Kellne...
Population matrix models for Frasera speciosa from 1974 to 2008
This dataset contains the matrix population models for a population of Frasera speciosa in the Elk Mountains of southwestern Colorado, for the years 1...
Data from: Transmission pathways and spillover of an erythrocytic bacterial pathogen from domestic cats to wild felids
Many pathogens infect multiple hosts, and spillover from domestic to wild species poses a significant risk for spread of diseases that threaten wildli...
Replication data for: Fig 11.1, Top right, GPDs, Colony sizes and compositions by year, 18 Dec 2025
FILE DESCRIPTION Keywords: Gunnison's prairie dog, Colony sizes and colony compositions by year File name = Fig 11.1, Top right, GPDs, Colony sizes an...